FastQCFastQC Report
Wed 31 May 2023
EGAF00007924452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376992
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56541.499766573295985No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA42521.127875392581275No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26590.705320006790595No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18400.48807401748578216No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15120.4010695187165776No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15050.399212715389186No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14450.3832972582972583No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12170.3228185213479331No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11370.3015979118920295No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10510.27878575672693323No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA10280.2726848315083609No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8930.23687505305152365No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7310.1939033189033189No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7050.18700662083015024No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6280.16658178422884307No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6220.16499023851965028No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC6100.16180714710126476No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC6070.16101137424666837No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5720.15172735760971057No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG5710.15146209999151178No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5640.14960529666412017No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5540.14695272048213223No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5490.1456264323911383No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5290.14032128002716238No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5270.1397907647907648No Hit
GCCAAACCGGTAGCGGTTCGCTCTCCGGCAC5260.13952550717256598No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5250.1392602495543672No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5240.1389949919361684No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4720.1252015957898311No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4640.12307953484424074No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4540.1204269586622528No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA4330.1148565486800781No Hit
CTGGTTGCCTCTTCTGACGGTACCAGCAAAA4260.11299974535268653No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4100.10875562346150583No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG3830.10159366777013835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)