FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373265
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC24980.6692296357815493No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16410.4396340401591363No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12130.32497019543755773No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11130.2981795775119553No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8400.22504119057506058No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8220.2202188793484522No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8110.21727191137663593No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT7770.20816310128193108No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7640.20468032095160277No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6550.17547854741269608No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6040.16181533227063882No Hit
GGTGCTGCGGGTGCCACCACCTTTCGGGGAACCACCACCTTTCG5400.14466933679825325No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5300.141990275005693No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5280.14145446264718095No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4880.13073821547693998No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4600.12323684245777128No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4580.12270103009925923No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4520.1210935930237231No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC4390.11761081269339477No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4310.11546756325934658No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT4260.11412803236306646No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4250.11386012618381043No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4190.11225268910827427No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4140.11091315821199416No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG3960.10609084698538572No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG3950.1058229408061297No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG3940.10555503462687367No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT3860.10341178519282547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)