FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373265
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26970.7225429654534982No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC24810.6646752307341969No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18150.4862497153496846No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16470.4412414772346724No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16240.4350796351117838No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9500.25451087029322333No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8200.2196830669899401No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7900.2116458816122594No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7740.207359382744163No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6720.1800329524600485No Hit
GCTGGTCACCTGATCGGTAAAGGCGCGAAAG6660.17842551538451235No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6230.1669055496765033No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5710.15297442835519No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5600.15002746038337372No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5580.1494916480248617No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5230.14011493175090084No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4980.13341727726950023No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG4900.13127402783545203No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4730.12671962278809962No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4680.12538009189181948No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG4660.12484427953330743No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4600.12323684245777128No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4520.1210935930237231No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA4510.12082568684446708No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4430.11868243741041888No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4340.11627128179711466No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4190.11225268910827427No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4110.1101094396742261No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG3970.10635875316464175No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC3970.10635875316464175No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC3930.10528712844761764No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3750.1004648172210092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)