FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007924458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences342126
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52431.5324763391265206No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24230.7082186095181308No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC21890.6398227553591367No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15160.44311160215826917No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14710.4299585532815396No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8010.23412427000578737No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7270.21249481185294308No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7220.21103336197775086No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6940.20284924267667467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5900.17245108527267733No Hit
GCTGGTCACCTGATCGGTAAAGGCGCGAAAG5880.17186650532260045No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5420.15842116647083238No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5390.15754429654571708No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5280.1543291068202943No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4890.14292979779379528No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4720.13796086821814185No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4680.13679170831798812No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4350.12714613914171974No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4220.12334636946622006No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4220.12334636946622006No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG4190.12246949954110474No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4180.12217720956606631No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4040.1180851499155282No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG3870.11311622033987477No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC3850.11253164038979792No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG3740.1093164506643751No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA3650.10668584088902919No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC3550.10376294113864483No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC3550.10376294113864483No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT3500.10230149126345264No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG3490.10200920128841422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)