FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380849
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26580.6979143965193555No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC25690.6745455547999338No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16870.4429577076479129No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15910.4177508671415705No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12650.3321526379221161No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9200.24156555485244807No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8720.22896213459927686No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA8500.2231855669832401No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7880.20690614915622726No Hit
GCTGGTCACCTGATCGGTAAAGGCGCGAAAG6920.18169930864988487No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6680.17539759852329928No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6440.16909588839671366No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6200.16279417827012804No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6090.15990589446210965No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5700.14966561550640806No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5600.14703990295366406No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5330.13995047906125524No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4910.12892248633973044No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4900.12865991508445604No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4820.12655934504226085No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4710.12367106123424244No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG4650.12209563370259603No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG4610.12104534868149844No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA4550.11946992114985203No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4540.11920734989457765No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4510.11841963612875443No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4420.11605649483128484No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4290.11264306851271765No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4160.10922964219415043No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4050.10634135838613204No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG3920.10292793206756483No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC3840.10082736202536964No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC3840.10082736202536964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)