FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387685
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17030.4392741529850265No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16710.4310200291473748No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13810.3562170318686563No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10150.2618104904755149No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9460.24401253595057845No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9420.24298077047087197No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9240.2383378258121929No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7930.20454750635180624No Hit
ACGCAGACGATAGTAGTTCAGTTCTGCGTCAGCGGTCAGACGCG7570.19526161703444805No Hit
ACGCAGGCACTGGGTGCGGATATATTCCTGCAGGTAGTTGACCT7300.18829720004642944No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6670.17204689374105264No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6550.1689515973019333No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6120.1578601183950888No Hit
GTGGGTGATGTTGCCAATTTTACGTGCCTGGTACTGAGACGGCA5990.1545068805860428No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5270.13593510195132646No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5260.13567716058139984No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5250.13541921921147324No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5010.12922862633323445No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5010.12922862633323445No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4970.128196860853528No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4650.1199427370158763No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG4620.11916891290609645No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4470.11529979235719721No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4270.1101409649586649No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4100.10575596166991243No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4040.10420831345035272No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG3970.10240272386086643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)