FastQCFastQC Report
Sun 21 May 2023
EGAF00007924462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387685
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50231.2956395011413906No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17990.46403652449798166No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16410.4232817880495763No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13550.34951055625056426No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12240.3157202367901776No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10070.259746959516102No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9470.24427047732050503No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9200.2373060603324864No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8400.21667075073835718No Hit
AACGCCACCATCGAAAGCCTGCGTGCCGATG8020.2068689786811458No Hit
TGTGCCAAATCTACTACCGGTGCATCCTCCA7800.20119426854276024No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7280.1877813173065762No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7250.18700749319679638No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6880.1774636625095116No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5840.15063776003714358No Hit
ACTGATTATGTAAAACGCAAAGGTTTCATCA5770.14883217044765726No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5700.14702658085817094No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5580.14393128441905156No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5490.14160981208971202No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5260.13567716058139984No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5250.13541921921147324No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5200.13412951236184015No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5030.12974450907308768No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4600.1186530301662432No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4480.11555773372712382No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4440.11452596824741736No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4440.11452596824741736No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4260.10988302358873828No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4250.10962508221881166No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT4090.10549802029998581No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA3930.10137095838115995No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG3890.1003391929014535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)