FastQCFastQC Report
Sun 21 May 2023
EGAF00007924464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368971
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55921.5155662640153291No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11280.3057150832992295No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11090.3005656271089056No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9340.2531364253559223No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8920.2417534169352063No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8910.24148239292518925No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8470.22955733648443916No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7180.19459523919224006No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7000.1897168070119332No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6070.16451157408034778No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6030.16342747804027957No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5020.1360540530285578No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4440.12033466044756905No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4180.11328803618712582No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4080.11057779608695535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)