FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401835
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23730.5905408936503789No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20950.5213582689412322No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18120.4509313524207697No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16340.40663456393793473No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16010.3984222379832519No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12510.31132181119116054No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10940.272251048315851No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT10250.25507982131969587No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9830.24462777010464493No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9680.24089489467069816No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9560.23790859432354078No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9380.2334291438028046No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG9380.2334291438028046No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8150.20281956524444114No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8060.20057983998407306No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7570.18838578023318028No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7470.1858971966105491No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7280.18116888772754985No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6950.17295656177286697No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6930.17245884504834072No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6920.17220998668607762No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6790.16897482797665708No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6790.16897482797665708No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6790.16897482797665708No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6520.1622556521955529No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6430.16001592693518485No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6180.1537944678786069No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6050.15055930916918633No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6030.1500615924446601No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6000.14931501735787078No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5960.1483195839088183No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5760.14334241666355593No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5680.141351549765451No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5500.13687209924471486No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5390.13413465725982057No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5320.13239264872397874No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5270.13114835691266316No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5050.12567347294287456No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4880.12144288078440157No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4750.11820772207498102No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4680.1164657135391392No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4660.11596799681461298No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4560.11347941319198179No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4430.11024425448256125No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4370.10875110430898254No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4300.1070090957731407No Hit
GTTACCCACGGTCAGGTCACCAGCGTTGGCAGTTACGTTAACGG4250.10576480396182512No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4200.10452051215050953No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4170.10377393706372019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)