FastQCFastQC Report
Wed 31 May 2023
EGAF00007924466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401835
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31530.7846504162156108No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22050.5487326887901751No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19010.4730797466621872No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18730.46611171251881994No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18650.46412084562071493No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18340.45640623639055833No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14560.3623377754550997No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13020.32401358766657956No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12990.3232670125797902No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12040.299625468164794No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11690.2909154254855849No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11440.2846939664290069No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11240.2797167991837446No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10760.2677715977951149No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC10640.2647852974479575No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9760.24288576156880315No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC9050.22521681784812173No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7970.198340114723705No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7950.19784239799917877No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7800.194109522565232No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7480.18614605497281222No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7250.1804223126407605No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7190.17892916246718182No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7180.1786803041049187No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7110.17693829556907686No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7010.17444971194644568No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6920.17220998668607762No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6900.1717122699615514No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6780.16872596961439398No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6270.15603419313897493No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6050.15055930916918633No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6030.1500615924446601No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5830.14508442519939777No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5690.1416004081277141No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5620.1398583995918723No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5430.13513009070887305No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5240.1304017818258738No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5190.12915749001455823No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4870.12119402242213845No Hit
TCTATCGTAGTGACCGGCAACGCAGGTTCCG4840.12044744733534908No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4720.11746114698819167No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4700.11696343026366543No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4650.11571913845234985No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4580.11397712991650802No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4520.1124839797429293No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4480.11148854629387683No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4360.10850224594671942No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4210.10476937051277266No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4170.10377393706372019No Hit
ATCGGTGGCACGATCTCTGGCGGCACCGTAG4020.10004106162977341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)