FastQCFastQC Report
Sun 21 May 2023
EGAF00007924467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412858
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24810.6009330084435811No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20470.4958121194212054No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18950.4589955868603733No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17400.4214524122095248No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15600.3778538868085395No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12640.30615853392691916No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11490.27830392047628966No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10450.25311366135572033No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10230.24778495269559994No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10200.24705831060558353No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT10190.24681609657557804No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG10000.24221403000547403No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9680.23446318104529887No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8620.20878849386471865No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8080.19570893624442304No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7970.19304458191436283No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7940.1923179398243464No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7560.18311380668413837No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7400.1792383822040508No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7230.17512074369395772No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7060.17100310518386466No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7010.1697920350338373No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6870.16640103861376065No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6780.1642211123437114No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6670.16155675801365119No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6600.15986125980361285No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6530.15816576159357457No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6470.15671247741354172No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6360.15404812308348148No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5900.1429062777032297No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5860.1419374215832078No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5860.1419374215832078No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5760.13951528128315305No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5660.1370931409830983No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5490.13297550247300524No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5380.13031114814294503No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5350.12958450605292862No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5300.12837343590290123No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4880.11820044664267133No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4690.11359838007256731No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4670.11311395201255636No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4580.11093402574250712No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4410.10681638723241405No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4400.10657417320240857No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4350.1053631030523812No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4300.10415203290235385No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4250.10294096275232648No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4180.10124546454228815No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4180.10124546454228815No Hit
GTTACCCACGGTCAGGTCACCAGCGTTGGCAGTTACGTTAACGG4150.10051882245227173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)