FastQCFastQC Report
Sun 21 May 2023
EGAF00007924469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382577
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21480.5614556024016081No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19480.5091785444498754No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18020.47101629214511065No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15250.398612566881961No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15070.39390763166630505No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11530.3013772390917384No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10320.2697496190309402No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10030.262169445627939No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG9640.25197541932735107No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT9540.24936156642976445No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9440.24674771353217786No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9340.24413386063459122No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9000.2352467607827967No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7600.19865282021658384No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7280.19028849094430664No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7190.18793602333647869No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7060.18453801456961605No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6890.18009446464371878No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6610.17277567653047624No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6530.17068459421240692No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6480.1693776677636136No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6330.16545688841723366No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6210.16232026494012972No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6190.16179749436061236No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6140.16049056791181904No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6070.15866087088350841No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5870.15343316508833515No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5840.15264900921905916No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5590.1461143769750926No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5550.14506883581605795No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5430.14193221233895398No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5290.1382728182823327No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5250.13722727712329805No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5240.1369658918335394No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5210.1361817359642634No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5120.13382926835643544No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4990.1304312595895728No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4940.1291243331407795No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4680.12232831560705427No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4610.12049861857874364No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4510.117884765681157No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4400.1150095274938117No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4370.11422537162453571No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4300.11239567459622507No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4220.11030459227815577No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4060.10612242764201717No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT3920.1024630335853959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)