FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392650
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42071.0714376671335795No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25430.647650579396409No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21030.5355914936966765No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19870.5060486438303833No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17470.4449255061759837No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16940.43142747994397046No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15160.38609448618362413No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14450.36801222462753086No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13790.351203361772571No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12320.31376543995925127No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11490.29262702152043807No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11350.2890615051572647No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10370.2641028906150516No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10200.25977333503119826No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9740.24805806698077168No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC9040.23023048516490513No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8520.21698713867311856No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8130.2070546288042786No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7020.1787851776391188No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6990.1780211384184388No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6980.17776645867821217No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6470.16477779192665223No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6420.1635043932255189No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6410.16324971348529224No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6140.15637336049917228No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5490.13981917738443908No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5190.13217878517763912No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5110.1301413472558258No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4960.12632115115242581No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4770.12148223608811919No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4690.11944479816630588No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4590.11689800076403922No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4570.11638864128358589No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4240.10798420985610593No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4190.10671081115497262No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC3940.10034381764930599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)