FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374389
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50491.348597314557853No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39921.0662706436353633No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24090.6434483919132239No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20390.5446207019971206No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18880.504288320436765No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16390.43777995614187387No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15180.40546063052066167No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14070.37581232354583066No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12690.3389522662257705No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11070.29568176415439557No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11030.2946133566958431No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10740.2868674026213377No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9690.2588217068343354No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9490.2534796695415731No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9050.24172718749749592No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC9050.24172718749749592No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7930.2118117786580268No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7800.20833945441773127No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6770.18082796236000523No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6740.18002665676609086No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6630.1770885362550716No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6570.1754859250672429No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6470.17281490642086172No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6390.1706780915037568No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6160.1645347486170801No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5050.1348864416422491No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4750.12687338570310558No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4690.1252707745152769No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4440.11859322789932397No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4370.11672351484685714No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4160.1111143756894567No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4090.10924466263698986No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG3950.10550523653205623No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC3940.10523813466741812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)