FastQCFastQC Report
Wed 31 May 2023
EGAF00007924478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394494
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60211.5262589545088139No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9460.23980085882168042No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4910.12446323644973055No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4250.10773294397379936No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4070.10317013693490902No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA3980.10088873341546387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)