FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392826
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21420.5452795894365444No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19180.4882568872732457No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG18920.4816381807721485No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15570.3963586931618579No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA12010.3057333272237581No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11800.30038744889594887No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11560.29427787366416686No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG11120.2830769857392332No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11050.28129502629663006No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10910.27773110741142387No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG10820.27544001669950563No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10630.27060326964101156No Hit
TACACCGGTGCGGGCTTTGGTACGCGCGTTACGACGTTTCAGGG9670.24616496871388352No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8290.21103491113113695No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7960.2026342451874367No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7900.20110685137949116No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG6690.17030440958592355No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6420.16343113745016877No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6370.16215830927688085No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG6290.1601217841996202No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6250.15910352166098987No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6120.15579416841044127No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5980.1522302495252351No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5860.14917546190934408No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5840.1486663306400289No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5740.14612067429345307No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5420.1379745739844104No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG5130.13059217057934047No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC5110.1300830393100253No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5100.1298284736753677No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG4920.12524629225153122No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4740.12066411082769471No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4570.11633649503851579No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4320.1099723541720762No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4300.10946322290276102No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4290.10920865726810343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)