FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436296
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22820.5230394044410217No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG21580.4946183325082054No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20400.46757247373342864No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18000.4125639474118489No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13470.30873535397986684No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13010.29819205310156405No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12890.2954416267854851No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12510.2867319434512349No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG12210.2798558776610375No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG12200.2796266754680309No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11500.2635825219575701No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11490.2633533197645635No Hit
TACACCGGTGCGGGCTTTGGTACGCGCGTTACGACGTTTCAGGG10490.24043310046390526No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9230.2115536241450758No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9080.20811559124997708No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8800.20169792984579277No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG7800.1787777105451345No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7500.17190164475493702No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7440.1705264315968975No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7080.16227515264866055No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG6940.1590663219465684No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6910.15837871536754863No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6870.1574619065955223No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG6750.15471148027944331No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6750.15471148027944331No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6660.15264866054238407No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC6290.1441681794011405No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6260.14348057282212076No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG6080.13935493334800228No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG6000.1375213158039496No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5700.13064525001375213No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5650.1294992390487192No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4850.1111630636081926No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4760.10910024387113335No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4670.10703742413407412No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC4580.10497460439701488No Hit
TGCAGCTGCACGCTGAGCCGCGGTACCCGGACGGCGACGGTGAC4480.10268258246694903No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG4470.10245338027394246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)