FastQCFastQC Report
Sun 21 May 2023
EGAF00007924489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552341
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27690.5013207420778106No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24880.45044637280230876No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21190.3836398167074325No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14200.2570875600399029No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13390.24242270626297888No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11560.2092909995817801No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8600.15570091664388483No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7070.1280006372874728No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6290.1138789262430274No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA6040.10935273680570518No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5750.1041023570584114No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5700.10319711917094693No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5530.10011931035356782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)