FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552341
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57581.0424719512040568No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44550.8065669577308221No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20870.3778462942276601No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16930.3065135486954617No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15080.27301974685927716No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12410.2246800436686757No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9370.16964158011083733No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6220.11261159320057719No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6020.10899064165071938No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5850.10591283283334027No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5600.10138664339601805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)