FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572877
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57561.0047532018216825No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20950.36569804687568186No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17510.3056502530211546No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC16370.28575069342982873No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13200.23041595316272082No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10510.1834599748288027No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9960.17385931011368932No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6930.12096837541042843No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6010.10490908170514787No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6000.10473452416487308No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5970.10421085154404873No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5820.1015924884399269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)