FastQCFastQC Report
Sun 21 May 2023
EGAF00007924493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559411
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29180.5216200610999784No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24210.432776616834492No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20660.36931701378771603No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14780.2642064600088307No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13400.23953765657092904No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11010.19681414916760662No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9220.16481620847641537No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6680.11941130939506016No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6660.11905379050465578No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5860.10475303488848091No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)