FastQCFastQC Report
Sun 21 May 2023
EGAF00007924497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521356
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18720.3590636724234496No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16420.3149479434397993No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15250.2925064639133337No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14460.2773536700450364No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14280.2739011347332725No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13680.2623926836940593No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9130.17512026331335978No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8950.17166772800159583No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG8200.15728216420257943No Hit
CTGCAGGGTCGGAGCTGCAATGGCCTGCAGAACGATACGACCGC8160.15651493413329856No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7940.15229516875225374No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7780.14922624847513022No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6920.13273080198559142No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6730.12908645915650727No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6060.1162353554960526No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6020.11546812542677172No Hit
GTTTTCCAGCGGACGTGCGGCCAGACCACGACCACGTGGGCCTT5800.1112483600457269No Hit
GGTAGTCATGGACAGATCGGTACCCAGACCGGTGTCAACGTCAG5780.11086474501108648No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5610.10760401721664276No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5460.10472690445683948No Hit

[OK]Adapter Content

Adapter graph