FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521356
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43920.8424186160704011No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37750.7240733778838261No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30850.591726190932875No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17930.34391087855515234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15550.29826068943294026No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12420.23822493651171178No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10590.20312416084211174No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9990.1916157098028986No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9490.18202533393688766No Hit
GGTTATTACTTCGATCGCGACGATGTAGCAC8400.16111831454898382No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7850.15056890109637178No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7450.14289660040356303No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6940.13311441702023186No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6860.1315799568816701No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6330.1214141584636985No Hit
AGCCGTCGCCTGGATGACTATTCTCTGGAAC5930.11374185777088974No Hit
GCATCTTCTTCTAGCGGCAGCTCTTCTCGTG5780.11086474501108648No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5720.10971389990716517No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5330.10223340673167662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)