FastQCFastQC Report
Sun 21 May 2023
EGAF00007924499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541121
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19460.35962381796308035No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17080.315641048859682No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15790.29180164879943676No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14800.2735062952648299No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14730.27221268440884755No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14420.2664838363323545No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9720.17962710743068555No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9300.17186544229479173No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG8840.16336457095547946No Hit
CTGCAGGGTCGGAGCTGCAATGGCCTGCAGAACGATACGACCGC8820.16299496785377024No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8530.1576357228789864No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8370.15467889806531257No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7010.12954588714908497No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6640.1227082297674642No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6420.11864259564866267No Hit
GGTAGTCATGGACAGATCGGTACCCAGACCGGTGTCAACGTCAG6390.11808819099609885No Hit
GTTTTCCAGCGGACGTGCGGCCAGACCACGACCACGTGGGCCTT6270.11587057238584347No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6070.11217454136875117No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5750.10626089174140349No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5600.10348886847858427No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5570.10293446382602042No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)