FastQCFastQC Report
Wed 31 May 2023
EGAF00007924500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541121
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38160.7052027180612099No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32370.598202620116388No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19070.35241655747975037No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15930.29438887051140133No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13030.24079642076356303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11130.20568412610118625No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10780.19921607182127474No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10530.19459603304990936No Hit
GGTTATTACTTCGATCGCGACGATGTAGCAC9100.16816941127769944No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9030.16687580042171712No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8540.157820524429841No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8500.15708131822642254No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7290.13472033057301416No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7030.12991549025079419No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6720.12418664217430113No Hit
AGCCGTCGCCTGGATGACTATTCTCTGGAAC6640.1227082297674642No Hit
GCATCTTCTTCTAGCGGCAGCTCTTCTCGTG6040.11162013671618733No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5990.11069612896191425No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5830.10773930414824041No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)