FastQCFastQC Report
Sun 21 May 2023
EGAF00007924501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527422
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17620.3340778352059641No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15550.2948303256216085No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA14800.28061021345336373No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12770.24212110985131452No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG12290.23302023806363784No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11210.21254327654136534No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG10280.1949103374527418No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10260.19453113446158862No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7740.14675155757628616No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7700.14599315159397977No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7280.1380298887797627No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6880.13044582895669882No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6580.12475778408940089No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA6110.11584651379730082No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG5640.10693524350520077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)