FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527422
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37320.7075927814918604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16680.316255294621764No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15760.29881195702871705No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC15210.28838387477200417No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14410.2732157551258764No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13270.25160118463014436No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12830.24325871882477407No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10230.19396232997485885No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG10020.1899806985677503No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9190.17424377443489275No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6930.1313938364345818No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT6620.12551619007170728No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5800.10996886743442633No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5630.10674564200962416No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5590.1059872360273178No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5300.10048879265559646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)