FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525535
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17610.3350871017153948No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14650.2787635457200757No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA14200.2702008429505171No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12540.2386139838450341No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG12420.23633059643981846No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11170.21254531096882223No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG10390.1977032928349206No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10130.1927559534569534No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8290.15774401324364695No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7740.1472784876364086No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7500.14271171282597733No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6690.12729884784077178No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5980.11378880569324593No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG5900.11226654742310217No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5560.1057969497749912No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA5560.1057969497749912No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5530.1052261029236873No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT5310.10103989268079194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)