FastQCFastQC Report
Wed 31 May 2023
EGAF00007924504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525535
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36100.686919044402371No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16600.31586859105482984No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15030.2859942725032586No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC14410.27419677090964445No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14410.27419677090964445No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13290.2528851551276318No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12960.24660583976328887No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10310.1961810345647768No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG10210.19427821172709714No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9310.17715280618797988No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6720.1278696946920757No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5900.11226654742310217No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5860.1115054182880303No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5770.10979287773411857No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5760.1096025954503506No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5670.10789005489643888No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5450.10370384465354353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)