FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences585063
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA35880.6132672891637311No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29830.5098596219552425No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19350.33073361330318274No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11970.20459335148522464No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7830.13383174119710187No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6480.1107573030596705No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6160.10528780661227936No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGTGCG6060.10357858897246963No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5980.10221121486062185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)