FastQCFastQC Report
Wed 31 May 2023
EGAF00007924511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534044
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25440.476365243313285No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21890.40989131981634475No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15540.2909872594767472No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15300.28649324774737667No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14940.2797522301533207No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14610.27357296402543607No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT13310.2492304004913453No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13270.2484813985364502No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13030.24398738680707957No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12990.24323838485218446No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11300.21159305225786637No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10120.18949749458846088No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9980.18687598774632802No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9690.18144572357333852No Hit
GCCGCCTTCCGTGCAAGAGGTTTTACGGAACCAGGAAAATGGGT8850.1657166825205414No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8380.15691590955052392No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7820.1464298821819925No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7750.14511912876092609No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7650.14324662387368833No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7460.13968886458793658No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7390.13837811116687013No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7330.1372546082345275No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6020.1127247942117129No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5400.10111526391083882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)