FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534044
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30480.5707394896300679No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27750.5196201062084772No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25920.4853532667720263No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17390.3256285998906457No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16260.30446929466485906No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14740.2760072203788452No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14500.2715132086494746No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13630.2552224161305061No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12340.23106710308513906No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12080.2261985903783209No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11020.20635003857360068No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10900.20410303270891536No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10000.18725048872377556No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9370.17545370793417772No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8890.16646568447543647No Hit
ACTAGCTGTCCGTTCACCCTGCCTCGTGGTG8690.16272067470096097No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8490.15897566492648546No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8410.15747766101669525No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8040.15054939293391556No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7870.14736613462561138No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7780.1456808802270974No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7340.13744185872325126No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7310.13688010725707994No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7020.13144984308409044No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5890.11029053785830381No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT5630.10542202515148565No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5570.10429852221914299No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5550.10392402124169543No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)