FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532849
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29600.5555044674945435No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28720.5389894698122732No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24240.45491311797526124No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17750.33311501006851846No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16100.30214938941426184No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15080.283007005737085No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14820.278127574603687No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14220.26686734891123No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12770.23965513682112569No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11740.22032508271574125No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10940.20531144845913193No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10560.19817997218724254No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10010.18785809863582364No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9720.18241565621780279No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9450.17734855465619717No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8680.16289793168421074No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8640.16214724997138025No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8320.15614179626873653No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8220.15426509198666039No Hit
ACTAGCTGTCCGTTCACCCTGCCTCGTGGTG8150.15295139898920707No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7880.14788429742760145No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7760.14563225228911006No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7300.13699941259155973No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6610.1240501530452342No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT5870.11016254135787062No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5670.10640913279371829No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5520.10359407637060407No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5340.10021600866286698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)