FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525275
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT67611.2871353100756746No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA52060.9910999000523535No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43030.8191899481224121No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28600.5444767026795488No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23050.4388177621246014No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19820.3773261624863167No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16740.3186902098900576No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14340.2729998572176479No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT12510.2381609633049355No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11900.22654799866736472No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11750.22369235162533913No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10710.20389319880062826No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10580.20141830469753938No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10190.1939936223882728No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10000.1903764694683737No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7640.1454476226738375No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7270.13840369330350769No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7260.1382133168340393No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7150.1361191756698872No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6790.12926562276902576No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG6770.128884869830089No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6650.1266003521964685No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6530.12431583456284803No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6440.12260244633763268No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6310.12012755223454381No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6130.11670077578411309No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6080.11574889343677122No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6000.11422588168102422No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5980.11384512874208748No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5870.11175098757793536No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5830.11098948170006188No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5780.11003759935271999No Hit
GAAGACGGTAAGGTTATGGTCCTGTGCAACC5670.10794345818856789No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5620.10699157584122604No Hit
CGTACCCTGAACGAACGTCTGTCTCGTGCGC5570.10603969349388415No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5360.10204178763504831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)