FastQCFastQC Report
Sun 21 May 2023
EGAF00007924523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513376
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20810.40535591846911423No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16620.32373932556255064No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11730.22848750233746806No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8520.165960231876831No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8150.15875303870847096No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7250.1412220282989466No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5630.10966620956180265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)