FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508966
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18240.358373643819037No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13770.2705485238699638No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11480.2255553416141746No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11090.21789274725620178No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9870.1939225802902355No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7510.1475540605855794No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6920.13596193065941536No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6540.1284958130798521No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5930.11651072959686895No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5850.11493891536959247No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5680.11159881013662995No Hit
CAGAACCGCCGCGACACCGGAGCCGTTATCGTTAATACCCGGGC5660.11120585657981084No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5250.10315030866501888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)