FastQCFastQC Report
Wed 31 May 2023
EGAF00007924530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508966
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42730.8395452741440488No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18090.3554264921428936No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18030.35424763147243626No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12010.23596861086988127No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11860.2330214591937379No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10840.21298082779596278No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8380.1646475403072111No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7680.15089416581854193No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7160.1406773733412448No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6900.13556897710259624No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6110.12004731160824103No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6010.11808254382414543No Hit
GTAAAACTGACCGCTAGCACCCAGTCCTTCA5940.11670720637527851No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5690.11179528691503951No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5310.10432916933547626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)