FastQCFastQC Report
Sun 21 May 2023
EGAF00007924532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568713
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50060.8802330876909795No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21580.3794532567393395No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17230.30296476430115016No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15040.2644567646598548No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14190.24951073740181778No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13910.2445873401874056No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11260.19799090226529023No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9440.165988820371611No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8320.14629523151396223No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7440.1308216974115239No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6670.1172823550718904No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6630.11657901261268866No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6540.11499649207948473No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6530.11482065646468428No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6410.11271062908707907No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6040.10620471133946296No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5820.10233632781385339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)