FastQCFastQC Report
Wed 31 May 2023
EGAF00007924534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537302
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46840.8717629936236976No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45610.8488708398628704No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19980.3718579123100231No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15490.2882922453294423No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14170.2637250559275789No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13330.2480913899445749No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12670.23580779524364323No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10520.19579305493000213No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7680.14293637470175058No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6800.12655824843384167No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6710.12488321279280554No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6630.12339429222299562No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6020.11204127287819514No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5940.11055235230838523No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5850.1088773166673491No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5740.10683005088386048No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5690.1058994755277293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)