FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565058
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47610.8425683735120997No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21420.37907613023795783No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16930.2996152607342963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14380.25448714999168226No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14290.25289439314194295No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13600.2406832572939415No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11690.20688141748280708No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10990.19449330865150127No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8130.1438790354264518No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7150.12653568306262367No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7040.1245889802462756No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6980.1235271423464494No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6450.11414757423131784No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6290.11131600649844796No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5920.1047680061161863No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5880.10406011418296883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)