FastQCFastQC Report
Sun 21 May 2023
EGAF00007924537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549075
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28210.513773163957565No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG23970.4365523835541593No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22870.41651869052497387No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18320.33365205117697944No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17000.30961161954195693No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15520.2826571961935983No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG14170.25807039111232527No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13670.24896416700815005No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13660.24878204252606656No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12480.22729135364021308No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11800.21490688885853482No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10990.200154805809771No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10930.19906205891726997No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC9810.1786641169239175No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9350.1702863907480763No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9290.16919364385557528No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8970.16336566042890316No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8700.15844829941264854No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7970.14515321222055275No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7440.13550061467012703No Hit
ACCACCATCACATTCTACCACGCACGCCGGGCACGGCTGACAAT7140.1300368802076219No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6700.12202340299594773No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6210.11309930337385604No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5960.10854619132176842No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5620.1023539589309293No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5600.10198970996676228No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5570.10144333652051178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)