FastQCFastQC Report
Sun 21 May 2023
EGAF00007924538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549075
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA57251.0426626599280608No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26960.491007603697127No Hit
ATGTCCAACATGGACATCGATGGTATTAACA24080.4385557528570778No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22230.40486272367162957No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18580.33838728771115056No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15460.2815644493010973No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14540.2648089969494149No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13930.2536994035423212No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13540.24659654874106454No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12740.2320265901743842No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11250.2048900423439421No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11140.20288667304102356No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10180.18540272276100714No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10000.1821244820835041No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC9730.17720712106724948No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9620.17520375176433092No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9560.17411100487182987No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9550.17392888038974638No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9020.16427628283932066No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8420.15334881391431043No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8380.15262031598597642No Hit
GTTCACGACTTCCTGACCCTGCTGAACAACG7340.133679369849292No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7190.13094750261803942No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7070.12876200883303737No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6620.1205664071392797No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6380.11619541956927561No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6140.1118244319992715No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6010.10945681373218596No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5900.10745344442926741No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5740.10453945271593135No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5720.10417520375176433No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5590.10180758548467878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)