FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548330
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28050.5115532617219557No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23800.4340451917640837No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG22460.4096073532361899No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17890.3262633815403133No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16330.29781336056754143No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14860.2710046869585833No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14000.2553207010376963No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13820.25203800631006873No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13240.24146043440993561No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12620.23015337479255193No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11480.20936297485091093No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11430.20845111520434775No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11000.20060912224390423No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC9810.17890686265570002No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9210.16796454689694162No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9180.1674174311090037No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9120.16632319953312785No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8460.1542866521984936No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7960.1451680557328616No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7160.13057830138785037No Hit
ACCACCATCACATTCTACCACGCACGCCGGGCACGGCTGACAAT6810.12419528386190798No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6540.11927124177046669No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5990.10924078565827149No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5840.10650520671858187No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5820.1061404628599566No Hit
CATACGGTCCAGGTCTTCGGTCGCGGAGCGAGCACGGGTGCTGG5790.10559334707201867No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5630.10267539620301644No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5490.10012218919263947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)