FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548330
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA58011.057939561942626No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27280.4975106231648824No Hit
ATGTCCAACATGGACATCGATGGTATTAACA22550.4112487006000036No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20980.38261630769791916No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18150.33100505170244193No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14810.2700928273120201No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14800.26991045538270747No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13510.2463844765013769No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13210.2409133186219977No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11660.21264566957853848No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11300.20608028012328344No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11240.2049860485474076No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10380.18930206262652052No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9910.18073058194882644No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9730.17744788722119892No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC9730.17744788722119892No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9570.17452993635219669No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9200.16778217496762898No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9130.1665055714624405No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8740.15939306621924754No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8280.1510039574708661No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7640.13933215399485713No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7380.13459048383272848No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6910.12601900315503436No Hit
GTTCACGACTTCCTGACCCTGCTGAACAACG6910.12601900315503436No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6560.11963598562909196No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6110.11142924881002317No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC5930.10814655408239564No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5930.10814655408239564No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5860.10686995057720716No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5720.1043167435668302No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5550.1012164207685153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)