FastQCFastQC Report
Sun 21 May 2023
EGAF00007924541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533118
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT26870.5040159964585702No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG22720.42617206697203996No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22530.4226081280316928No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16960.3181284443594101No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16800.3151272326201704No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14440.27085935946638456No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13790.2586669367757232No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13060.244973908215442No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12280.23034300098664834No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11810.2215269415026317No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11220.21045997321418522No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10390.19489118731687918No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10130.19001421824061465No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC9510.17838452275106073No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9350.175383311011821No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8940.16769270593001925No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8650.16225300965264727No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8220.1541872531034405No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8110.1521239200327132No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7280.13655513413540718No Hit
ACCACCATCACATTCTACCACGCACGCCGGGCACGGCTGACAAT6830.12811422611879547No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6310.11836028796626638No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5900.1106696828844646No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5650.10598028954190254No Hit
CATACGGTCCAGGTCTTCGGTCGCGGAGCGAGCACGGGTGCTGG5530.10372938073747275No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5360.10054059326453056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)