FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533118
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA55171.0348553228365953No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42000.787818081550426No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24710.4634996379788339No Hit
ATGTCCAACATGGACATCGATGGTATTAACA22550.42298327949909775No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21750.4079772208028991No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16310.3059360216687487No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14300.2682332991945498No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13880.26035511837904557No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12930.2425354236773097No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12680.23784603033474766No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12190.228654819383326No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10530.19751724758871395No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10070.18888876383839975No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10020.18795088516988734No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9900.18569997636545757No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC9530.1787596742184657No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9370.17575846247922597No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8720.16356603978856463No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8560.16056482804932493No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7900.14818482962496107No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7740.14518361788572134No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7620.14293270908129158No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7110.13336634666246497No Hit
GTTCACGACTTCCTGACCCTGCTGAACAACG6850.12848937758620044No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6200.11629695489553907No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5910.11085725861816709No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC5610.10522998660709261No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5570.10447968367228268No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5480.10279150206896033No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5450.10222877486785288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)