FastQCFastQC Report
Wed 31 May 2023
EGAF00007924544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433005
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24230.5595778339742035No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21530.49722289580951723No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13000.3002274800521934No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10460.2415676493343033No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8050.18591009341693515No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7900.18244593018556368No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7900.18244593018556368No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7750.1789817669541922No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5560.12840498377616885No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4840.11177700026558585No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4470.10323206429486959No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4420.10207734321774574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)