FastQCFastQC Report
Sun 21 May 2023
EGAF00007924546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416852
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34950.8384270676403136No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22630.5428785276309097No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19330.46371374012839095No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12440.29842725955495No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9670.23197681671192652No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8290.1988715419381459No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7600.1823189045512556No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7270.17440242580100374No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5310.12738333989041672No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4780.11466899523092128No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4380.10507326341243416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)