FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433367
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23610.5448038267796117No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20400.47073265846268864No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13200.30459172018173974No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9600.22152125104126524No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8420.19429259726744308No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8210.1894468199009154No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7820.180447519077364No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7430.1714482182538126No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6190.14283505666098248No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4720.10891461509528876No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4420.1019920760002492No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4420.1019920760002492No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4360.10060756818124131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)