FastQCFastQC Report
Wed 31 May 2023
EGAF00007924550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518841
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19600.37776505711769115No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15720.3029829947903115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12940.24940203260729205No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9790.18868979128480595No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8900.17153617389527812No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8480.16344120838561332No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7760.14956412465475935No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7740.14917865010668008No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7700.14840770101052153No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6900.13298871908735047No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5720.11024572075067313No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5510.10619823799584073No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5380.10369265343332544No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5270.10157254341888941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)